STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24815Hypothetical protein; COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases. (417 aa)    
Predicted Functional Partners:
RAM_24820
Hypothetical protein; COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases.
 
    
0.752
RAM_24825
Hypothetical protein.
       0.568
whiB-3
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.563
ComE-2
Competence protein ComEA; COG1555 DNA uptake protein and related DNA-binding proteins.
  
    0.563
TlyA
Hemolysin-like protein; COG1189 Predicted rRNA methylase.
      
 0.480
RAM_39660
Nicotinamidase; COG1335 Amidases related to nicotinamidase.
     
 0.475
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
  
  
 0.471
HelY
COG4581 Superfamily II RNA helicase.
 
     0.469
RAM_25150
COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH).
      
 0.455
RAM_36225
Arabinosyl transferase.
      
 0.444
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.