STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24895Glycerophosphatase; COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase. (500 aa)    
Predicted Functional Partners:
pafA
Hypothetical protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.
  
    0.586
RAM_39810
Hypothetical protein.
  
 
 0.534
RAM_24900
Esterase; COG0627 Predicted esterase.
       0.522
RAM_41560
Hypothetical protein.
  
     0.511
RAM_06045
Hypothetical protein.
  
     0.509
RAM_24825
Hypothetical protein.
  
     0.500
RAM_00475
COG4549 Uncharacterized protein conserved in bacteria.
  
     0.448
RAM_10655
Hypothetical protein.
  
     0.444
RAM_47850
Hypothetical protein.
  
    0.425
RAM_43565
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.