STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24900Esterase; COG0627 Predicted esterase. (411 aa)    
Predicted Functional Partners:
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.782
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.782
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.782
RAM_23635
Hypothetical protein.
  
     0.602
RAM_22810
Hypothetical protein.
  
     0.584
RAM_35415
Transposase.
  
     0.577
XynA-6
Glycosyl hydrolase/beta-1,4-xylanase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
   0.555
RAM_24435
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.549
RAM_18750
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.526
RAM_24895
Glycerophosphatase; COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.
       0.522
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.