STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ParACOG1192 ATPases involved in chromosome partitioning. (311 aa)    
Predicted Functional Partners:
ParB
Chromosome partitioning protein ParB; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
 
 
 0.913
RAM_44900
Hypothetical protein.
  
 
 
 0.730
RAM_47905
Hypothetical protein.
 
    0.694
RAM_44890
Hypothetical protein.
  
     0.640
RAM_37450
Chromosome partitioning protein ParB; COG1475 Predicted transcriptional regulators.
  
 
 0.631
RAM_24995
COG2887 RecB family exonuclease.
     
 0.611
RAM_44895
Hypothetical protein.
  
     0.598
RAM_25000
Hypothetical protein.
       0.593
dnaA
Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.580
RAM_01105
Hypothetical protein.
  
     0.572
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.