STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_25055Hypothetical protein. (181 aa)    
Predicted Functional Partners:
RAM_25050
Phosphotriesterase-family protein; COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
     0.710
RAM_17980
Hypothetical protein.
  
     0.610
RAM_33340
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.510
RAM_11580
Hypothetical protein.
  
     0.467
RAM_32040
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
 
     0.463
RAM_10485
Beta-lactamase class B; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
     0.460
RAM_30260
COG1309 Transcriptional regulator.
  
     0.437
RAM_09865
Hypothetical protein.
  
     0.431
RAM_25805
Beta-mannosidase; COG3250 Beta-galactosidase/beta-glucuronidase.
  
     0.422
RAM_29555
Hypothetical protein; COG3631 Ketosteroid isomerase-related protein.
  
     0.415
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.