STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_25060Metallophosphoesterase; COG1409 Predicted phosphohydrolases. (277 aa)    
Predicted Functional Partners:
RAM_25065
Hypothetical protein; COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
       0.683
RAM_39095
COG3321 Polyketide synthase modules and related proteins.
 
  
 0.664
RAM_25070
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
    0.507
RifB
COG3321 Polyketide synthase modules and related proteins.
 
  
 0.447
RifA
Rifamycin polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
  
 0.442
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
  
 0.429
RifE
COG3321 Polyketide synthase modules and related proteins.
 
   
 0.423
RAM_17125
Phenolpthiocerol synthesis type-I polyketide synthase PpsD; COG3321 Polyketide synthase modules and related proteins.
  
   
 0.419
RAM_44855
Hypothetical protein.
  
     0.415
RifD
COG3321 Polyketide synthase modules and related proteins.
  
   
 0.414
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.