STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_25070COG1680 Beta-lactamase class C and other penicillin binding proteins. (457 aa)    
Predicted Functional Partners:
RAM_25065
Hypothetical protein; COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
  
    0.577
RAM_13835
Hypothetical protein; COG0640 Predicted transcriptional regulators.
  
     0.559
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.519
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.519
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.519
RAM_25060
Metallophosphoesterase; COG1409 Predicted phosphohydrolases.
  
    0.510
RAM_25705
Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
   
 0.501
RAM_10185
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.439
RAM_45200
COG3876 Uncharacterized protein conserved in bacteria.
 
  
 0.406
RAM_38330
Esterase/lipase; COG4188 Predicted dienelactone hydrolase.
  
     0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.