RAM_25090 protein (Amycolatopsis mediterranei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RAM_25090

ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (543 aa)

Predicted Functional Partners:

rpsO

0.768

rpsT

0.737

rpsE

0.736

rplD

0.731

rplU

0.727

rpsC

0.716

rplQ

0.716

rplC

0.714

rpmD

0.713

rpsD

0.713

Your Current Organism:

Amycolatopsis mediterranei

NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RAM_25090	rplC	RAM_25090	RAM_03460	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.714
RAM_25090	rplD	RAM_25090	RAM_03465	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.731
RAM_25090	rplQ	RAM_25090	RAM_03620	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG0203 Ribosomal protein L17.	0.716
RAM_25090	rplU	RAM_25090	RAM_34400	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.727
RAM_25090	rpmD	RAM_25090	RAM_03550	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG1841 Ribosomal protein L30/L7E.	0.713
RAM_25090	rpsC	RAM_25090	RAM_03490	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.716
RAM_25090	rpsD	RAM_25090	RAM_03610	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.713
RAM_25090	rpsE	RAM_25090	RAM_03545	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.736
RAM_25090	rpsO	RAM_25090	RAM_32405	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.768
RAM_25090	rpsT	RAM_25090	RAM_34295	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.737
rplC	RAM_25090	RAM_03460	RAM_25090	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	0.714
rplC	rplD	RAM_03460	RAM_03465	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplQ	RAM_03460	RAM_03620	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0203 Ribosomal protein L17.	0.999
rplC	rplU	RAM_03460	RAM_34400	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplC	rpmD	RAM_03460	RAM_03550	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG1841 Ribosomal protein L30/L7E.	0.999
rplC	rpsC	RAM_03460	RAM_03490	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsD	RAM_03460	RAM_03610	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.997
rplC	rpsE	RAM_03460	RAM_03545	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplC	rpsO	RAM_03460	RAM_32405	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.995
rplC	rpsT	RAM_03460	RAM_34295	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.980

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About