STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_25105Amidohydrolase; COG1820 N-acetylglucosamine-6-phosphate deacetylase. (423 aa)    
Predicted Functional Partners:
RAM_38610
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.705
RAM_25100
COG0789 Predicted transcriptional regulators.
 
     0.616
RAM_33000
Amidohydrolase-related protein; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.599
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.566
mshC
cysteinyl-tRNA synthetase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
       0.525
RAM_09915
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.519
HutH
COG2986 Histidine ammonia-lyase.
  
  
 0.446
HutH-2
COG2986 Histidine ammonia-lyase.
  
  
 0.446
HutH-3
COG2986 Histidine ammonia-lyase.
  
  
 0.446
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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