STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ChlICOG1239 Mg-chelatase subunit ChlI. (465 aa)    
Predicted Functional Partners:
RAM_25110
COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain.
 
    0.979
ChlD
COG1239 Mg-chelatase subunit ChlI.
  
 0.951
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
 
 0.934
HemY
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
   
 
 0.917
HemG
Flavodoxin-like protein; COG4635 Flavodoxin.
     
  0.900
RAM_25125
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
  
 0.589
RAM_25120
Hypothetical protein.
       0.567
RAM_23610
Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase.
 
     0.554
cobN
Cobaltochelatase subunit CobN; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.
  
  
 0.546
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
 
     0.544
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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