STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_25195COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain. (326 aa)    
Predicted Functional Partners:
RAM_25200
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
  
 0.984
MoxR-2
COG0714 MoxR-like ATPases.
 
  
 0.931
RAM_08490
ACT domain-containing protein.
 
     0.592
RAM_45975
Hypothetical protein.
  
     0.586
ChlI
COG1239 Mg-chelatase subunit ChlI.
  
 
 0.513
ChlD
COG1239 Mg-chelatase subunit ChlI.
  
 
 0.513
MoxR-3
COG0714 MoxR-like ATPases.
 
  
 0.508
RAM_47760
Hypothetical protein.
  
     0.506
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.468
MoxR
COG0714 MoxR-like ATPases.
 
  
 0.446
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.