STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_25275COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
RAM_25280
COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
 
 
 
 0.792
RAM_37190
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.732
HcaR-2
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.714
RAM_04890
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.709
RAM_32375
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.705
RAM_23520
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.703
RAM_20465
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.676
RAM_31470
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.662
HcaR-3
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.569
egtB
Hypothetical protein; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family.
  
    0.518
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.