STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_41190Hypothetical protein. (154 aa)    
Predicted Functional Partners:
RAM_41185
Hypothetical protein.
 
     0.838
RAM_10745
Hypothetical protein.
  
     0.728
RAM_08470
vitamin-B12 independent methionine synthase.
  
     0.682
RAM_10375
Acetyltransferase; COG3393 Predicted acetyltransferase.
  
     0.630
RAM_41170
Hypothetical protein.
 
     0.629
manB
Phosphomannomutase/phosphoglucomutase; COG1109 Phosphomannomutase.
       0.572
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.564
RAM_13235
Hypothetical protein.
  
     0.544
RAM_43475
Hypothetical protein.
  
   
 0.540
ManA-2
COG1482 Phosphomannose isomerase.
 
     0.537
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.