STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmLUnannotated protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (170 aa)    
Predicted Functional Partners:
CJ223_02525
Unannotated protein.
       0.836
CJ223_02520
Unannotated protein; Belongs to the FtsK/SpoIIIE/SftA family.
       0.817
CJ223_02515
Unannotated protein.
  
    0.807
CJ223_02510
Unannotated protein.
  
    0.801
tpiA
Unannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
      0.676
CJ223_02535
Unannotated protein.
       0.598
CJ223_02505
Unannotated protein.
       0.584
CJ223_02540
Unannotated protein.
       0.581
pgsA
Unannotated protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.570
CJ223_00570
Unannotated protein.
     
 0.501
Your Current Organism:
Lactobacillus iners
NCBI taxonomy Id: 713605
Other names: L. iners AB-1, Lactobacillus iners AB-1, Lactobacillus iners str. AB-1, Lactobacillus iners strain AB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.