Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMQ93256.1Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (809 aa)    
Predicted Functional Partners:
dprA
DNA repair protein Smf; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.906
AMQ94237.1
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.882
pilB
Protein transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.772
AMQ94354.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.769
pilD
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.762
AMQ94736.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.715
AMQ94000.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family.
 
  
 0.713
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
 0.702
AMQ94801.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.701
msbA
Lipid transporter ATP-binding/permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
       0.699
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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