STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ93463.1Alpha-2-macroglobulin; Derived by automated computational analysis using gene prediction method: Protein Homology. (1923 aa)    
Predicted Functional Partners:
pbpC
Penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.940
AMQ93862.1
CDP-alcohol phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
tldD
Protein TldD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.584
AMQ93861.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.529
AMQ93860.1
Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family.
  
    0.520
AMQ93462.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0324 family.
       0.465
nrdR
NrdR family transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.438
AMQ94714.1
Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
AMQ93461.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.419
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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