STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysMPeptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)    
Predicted Functional Partners:
AMQ93331.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.914
AMQ94643.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.838
pilQ
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.735
nlpD
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.654
AMQ93621.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.600
AMQ94641.1
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.530
AMQ94009.1
Competence protein ComA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.480
AMQ94010.1
Competence protein ComB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.480
AMQ94354.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.480
pilB
Protein transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.480
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.