Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
pilQSecretin; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)    
Predicted Functional Partners:
pilB
Protein transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.970
AMQ94010.1
Competence protein ComB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.958
AMQ94354.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.912
AMQ94009.1
Competence protein ComA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.891
pilD
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.879
AMQ94012.1
Competence protein ComD; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.827
pilW
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.812
pilA
Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.772
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
 0.771
AMQ94011.1
Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.753
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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