STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilDPeptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
pilB
Protein transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.976
AMQ94354.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.947
pilQ
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.879
pilA
Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.851
ampD
N-acetyl-anhydromuranmyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.776
AMQ93256.1
Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.762
dprA
DNA repair protein Smf; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.761
pilW
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.739
tadB
Protein dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.553
tadZ
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.540
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.