STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcpBRcpB protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)    
Predicted Functional Partners:
rcpC
Flp operon protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.923
tadZ
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.910
tadB
Protein dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.900
AMQ94508.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
     
 0.897
tadE
Protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.890
tadV
Flp operon protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.869
flp2
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.858
AMQ94514.1
NrfG protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.773
AMQ94516.1
Pilus assembly protein TadF; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.744
AMQ94513.1
Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.706
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.