Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMQ94517.1Pilus assembly protein TadG; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)    
Predicted Functional Partners:
AMQ94516.1
Pilus assembly protein TadF; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.865
tadZ
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.768
tadB
Protein dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.762
rcpC
Flp operon protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.729
AMQ94511.1
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.725
AMQ94513.1
Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.702
AMQ94508.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
  
 0.664
AMQ94514.1
NrfG protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.634
tadE
Protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.625
AMQ94504.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.591
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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