STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ94597.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)    
Predicted Functional Partners:
AMQ95162.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.877
AMQ94598.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AMQ94599.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AMQ94600.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AMQ94608.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.741
AMQ94601.1
Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
AMQ95045.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.524
AMQ94596.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
AMQ94595.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
topA
DNA topoisomerase I subunit omega; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus rem [...]
     
 0.439
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.