STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ95066.1With IsrABC is involved with autoinducer 2 import; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (334 aa)    
Predicted Functional Partners:
lsrB
Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.996
lsrA
ABC transporter ATP-binding protein; With LsrCDB is involved in the transport of autoindiuce 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.987
AMQ95189.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.960
rbsB
D-ribose ABC transporter substrate-binding protein; Periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.867
AMQ93894.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.862
lsrF
Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.845
lsrK
Autoinducer kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.807
lsrG
Autoinducer-2 (AI-2) modifying protein LsrG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.783
AMQ93416.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.781
xylG
Xylose transporter; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 
 0.770
Your Current Organism:
Aggregatibacter actinomycetemcomitans
NCBI taxonomy Id: 714
Other names: A. actinomycetemcomitans, ATCC 33384, Actinobacillus (Haemophilus) actinomycetemcomitans, Actinobacillus actinomycetemcomitans, Bacterium acetinomycetum comitans, Bacterium actinomycetem comitans, Bacterium comitans, CCUG 13227, CIP 52.106, DSM 8324, Haemophilus actinomycetemcomitans, Haemophilus actinomyceticomitans, NCTC 9710
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