Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HI_0223rarD protein, putative; Similar to SP:P27844 percent identity: 25.08; identified by sequence similarity; putative. (300 aa)    
Predicted Functional Partners:
HI_0224
Transcriptional regulator, putative; Similar to SP:P55658 PID:2182633 percent identity: 38.19; identified by sequence similarity; putative.
       0.556
HI_0096
Predicted coding region HI0096; Hypothetical protein; identified by GeneMark; putative.
      
 0.498
HI_1287
Type I modification enzyme (hsdM); Methylation of specific adenine residues; required for both restriction and modification activities.
      
 0.498
cmk2
Cytidylate kinase 2 (cmkB); Similar to SP:P23863 PID:42839 GB:U00096 PID:1651431 PID:1651438 percent identity: 63.55; identified by sequence similarity; putative.
      
 0.482
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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