Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HI_0666Predicted coding region HI0666; Hypothetical protein; identified by GeneMark; putative. (106 aa)    
Predicted Functional Partners:
HI_0665
Predicted coding region HI0665; Hypothetical protein; identified by GeneMark; putative; Belongs to the HipA Ser/Thr kinase family.
 
 
 
 0.996
HI_0666.1
Predicted coding region HI0666.1; Brute Force ORF; identified by GeneMark; putative.
     
 0.909
glpX
glpX protein (glpX); Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate.
       0.445
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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