Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
HI_1076Cytochrome D ubiquinol oxidase, subunit I (cydA); Probable cytochrome oxidase subunit. (521 aa)    
Predicted Functional Partners:
HI_1075
Cytochrome D ubiquinol oxidase, subunit II (cydB); Probable cytochrome oxidase subunit; Belongs to the cytochrome ubiquinol oxidase subunit 2 family.
 0.999
cydD
ATP-binding protein protein (cydD); Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system (By similarity); Belongs to the ABC transporter superfamily. Cysteine exporter (TC 3.A.1.129.1) family.
 
  
 0.865
cydC
Transport ATP-binding protein (cydC); Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system (By similarity); Belongs to the ABC transporter superfamily. Cysteine exporter (TC 3.A.1.129.1) family.
 
  
 0.835
HI_0663
ATP-binding transport protein (cydD); Similar to SP:P27299 GB:Z11796 PID:42023 GB:U00096 PID:1651441 percent identity: 27.76; identified by sequence similarity; putative.
  
  
 0.583
frdA
Fumarate reductase, flavoprotein subunit (frdA); Similar to GB:U14003 SP:P00363 GB:J01611 PID:145263 PID:536998 percent identity: 75.54; identified by sequence similarity; putative.
     
 0.581
frdB
Fumarate reductase, iron-sulfur protein (frdB); Similar to GB:U14003 SP:P00364 GB:J01611 PID:145264 PID:536997 percent identity: 75.51; identified by sequence similarity; putative.
     
 0.580
hrpA
ATP-dependent helicase (hrpa); Similar to SP:P43329 PID:806328 GB:U00096 PID:1742299 PID:1742304 percent identity: 70.29; identified by sequence similarity; putative.
       0.405
HI_1073
Conserved hypothetical protein; Similar to SP:P32065 GB:U01030 GB:X73413 PID:312767 PID:523332 percent identity: 43.55; identified by sequence similarity; putative.
       0.405
HI_1074
Conserved hypothetical protein; Similar to GB:U00096 PID:1788090 percent identity: 51.37; identified by sequence similarity; putative.
       0.405
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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