Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HI_1287Type I modification enzyme (hsdM); Methylation of specific adenine residues; required for both restriction and modification activities. (443 aa)    
Predicted Functional Partners:
HI_1286
Type I restriction/modification specificity protein (hsdS); The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. Subunit S dictates DNA sequences specificity (By similarity).
 
 
 0.996
HI_0216
Type I restriction/modification specificity protein (hsdS); The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. Subunit S dictates DNA sequences specificity (By similarity).
 
 
 0.970
HI_1285
Type I restriction enzyme (hsdR); Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.969
HI_1650
Predicted coding region HI1650; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.726
uvrB
Excinuclease ABC, subunit B (uvrB); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dis [...]
    
   0.558
HI_0096
Predicted coding region HI0096; Hypothetical protein; identified by GeneMark; putative.
      
 0.498
HI_0223
rarD protein, putative; Similar to SP:P27844 percent identity: 25.08; identified by sequence similarity; putative.
      
 0.498
cmk2
Cytidylate kinase 2 (cmkB); Similar to SP:P23863 PID:42839 GB:U00096 PID:1651431 PID:1651438 percent identity: 63.55; identified by sequence similarity; putative.
      
 0.482
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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