Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HI_1422Predicted coding region HI1422; Hypothetical protein; identified by GeneMark; putative. (191 aa)    
Predicted Functional Partners:
HI_1405
Predicted coding region HI1405; Hypothetical protein; identified by GeneMark; putative.
  
   
 0.615
HI_1409
Predicted coding region HI1409; Hypothetical protein; identified by GeneMark; putative.
  
   
 0.588
HI_1421
Predicted coding region HI1421; Hypothetical protein; identified by GeneMark; putative.
       0.522
HI_1407
traN-related protein; Similar to GB:L10330 PID:437700 percent identity: 40.17; identified by sequence similarity; putative; To E.coli plasmid IncP-alpha RP4 protein TraN.
  
   
 0.512
HI_1410
Predicted coding region HI1410; Hypothetical protein; identified by GeneMark; putative.
      
 0.465
HI_1403
Predicted coding region HI1403; Hypothetical protein; identified by GeneMark; putative.
      
 0.446
HI_1424
Integrase/recombinase, putative; Similar to SP:P10487 GB:D90039 SP:P16470 GB:X05022 GB:X12577 percent identity: 31.10; identified by sequence similarity; putative; Belongs to the 'phage' integrase family.
      
 0.446
HI_1423
Predicted coding region HI1423; Hypothetical protein; identified by GeneMark; putative.
       0.410
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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