Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
nlpDNA-binding protein (ner); Negative regulator of transcription starting from the Pe and Pc promoters of Mu. Also negatively regulates its own gene transcription (By similarity). (89 aa)    
Predicted Functional Partners:
HI_1478
Transposase (muA); This transposase is essential for integration, replication- transposition, and excision of Mu-like viral DNA.
 
   
 0.966
HI_1481
DNA transposition protein (muB); This protein is a non-specific DNA-binding and ATP- hydrolyzing protein essential for bacteriophage integration and replication.
 
   
 0.888
HI_1501
Predicted coding region HI1501; Hypothetical protein; identified by GeneMark; putative; To phage Mu protein gp29.
  
   
 0.863
HI_1505
Predicted coding region HI1505; Hypothetical protein; identified by GeneMark; putative; To phage Mu protein T.
  
   
 0.857
HI_1514
Predicted coding region HI1514; Hypothetical protein; identified by GeneMark; putative.
  
   
 0.783
HI_1476
Transcriptional regulatory protein; Similar to SP:Q37906 PID:403436 percent identity: 28.43; identified by sequence similarity; putative.
 
     0.757
HI_1508
Conserved hypothetical protein; Similar to PID:2353778 percent identity: 80.53; identified by sequence similarity; putative; To phage Mu protein gp36.
  
     0.757
HI_1504
I protein (muI); Potential protease involved in virion morphogenesis.
  
     0.753
HI_1571
Predicted coding region HI1571; Hypothetical protein; identified by GeneMark; putative.
  
     0.752
HI_1502
Predicted coding region HI1502; Involved in virion morphogenesis.
  
     0.750
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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