Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
HI_1721Transposase, putative; Similar to SP:P19769 GB:X07037 PID:581111 PID:912474 GB:U00096 percent identity: 54.55; identified by sequence similarity; putative; Belongs to the transposase IS3/IS150/IS904 family. (216 aa)    
Predicted Functional Partners:
HI_1720
Conserved hypothetical protein; Similar to GB:U09558 PID:495495 percent identity: 33.33; identified by sequence similarity; putative; Belongs to the IS150/IS1296 orfA family.
 
    0.877
HI_0112
Predicted coding region HI0112; Hypothetical protein; identified by GeneMark; putative; Belongs to the IS150/IS1296 orfA family.
  
    0.621
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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