STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily. (338 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein oppB.
 0.999
oppC
Oligopeptide transport system permease protein oppC.
 
 0.999
oppF
Oligopeptide transport ATP-binding protein oppF.
 
 
0.996
oppA
Oligopeptide-binding protein oppA.
 
 
 0.989
LSA_00570
Hypothetical protein.
 
      0.861
tcyB
L-cystine transport system permease protein tcyB.
 
 
    0.561
ybbL
Uncharacterized ABC transporter ATP-binding protein ybbL.
 
     
0.551
LSA_03150
Hypothetical protein; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
 
      0.455
ecsA
ABC-type transporter ATP-binding protein ecsA.
     
0.404
pepN
Aminopeptidase N.
  
  
 0.401
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.