STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSA_01070Hypothetical protein. (142 aa)    
Predicted Functional Partners:
LSA_01080
Hypothetical protein.
 
    0.811
LSA_01090
Hypothetical protein.
       0.773
LSA_06500
Hypothetical protein.
  
     0.766
LSA_08890
Hypothetical protein.
  
     0.722
LSA_09320
Hypothetical protein.
 
     0.695
LSA_10160
Hypothetical protein.
  
     0.673
LSA_03430
Hypothetical protein.
  
     0.653
LSA_09890
Hypothetical protein.
  
     0.550
LSA_02390
Hypothetical protein.
 
     0.523
LSA_01330
Hypothetical protein.
  
     0.489
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.