STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSA_01540Hypothetical protein. (167 aa)    
Predicted Functional Partners:
insK-2
Putative transposase insK for insertion sequence element IS150.
 
    0.813
LSA_03420
Hypothetical protein.
  
     0.771
LSA_12420
Hypothetical protein.
  
     0.771
LSA_01270
Hypothetical protein.
  
     0.770
LSA_10770
Hypothetical protein.
  
     0.769
LSA_13140
Hypothetical protein.
  
     0.769
yvdK
Uncharacterized glycosyl hydrolase yvdK.
       0.570
LSA_01520
Hypothetical protein.
       0.570
yvdM
Putative beta-phosphoglucomutase.
       0.570
LSA_01500
Hypothetical protein.
       0.475
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.