STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSA_01990Hypothetical protein. (241 aa)    
Predicted Functional Partners:
tcyB
L-cystine transport system permease protein tcyB.
 0.996
LSA_08540
Putative amino-acid ABC transporter ATP-binding protein.
 
 0.969
LSA_01840
Hypothetical protein.
 
 0.967
glnP
Putative glutamine ABC transporter permease protein glnP.
 
 0.914
glnM
Putative glutamine ABC transporter permease protein glnM.
 
 0.889
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.560
glnQ
Glutamine transport ATP-binding protein glnQ.
 
 
 0.473
LSA_01980
Hypothetical protein.
       0.464
glnQ-2
Glutamine transport ATP-binding protein glnQ.
 
 
 0.452
LSA_10490
Hypothetical protein.
 
 
 0.441
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.