Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSA_02390Hypothetical protein. (135 aa)    
Predicted Functional Partners:
LSA_02380
Hypothetical protein.
 
     0.772
LSA_06500
Hypothetical protein.
  
    0.761
LSA_07190
Hypothetical protein.
  
     0.754
LSA_02020
Hypothetical protein.
  
     0.753
LSA_07260
Hypothetical protein.
  
 
 0.738
LSA_07940
Hypothetical protein.
  
     0.738
LSA_03180
Hypothetical protein.
  
    0.735
LSA_10440
Hypothetical protein.
  
     0.670
LSA_12280
Hypothetical protein.
  
     0.653
LSA_11680
Hypothetical protein.
  
     0.623
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
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