STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSA_03810Hypothetical protein. (106 aa)    
Predicted Functional Partners:
LSA_03800
Hypothetical protein.
 
  
 0.959
LSA_07940
Hypothetical protein.
  
     0.768
LSA_01170
Hypothetical protein.
 
  
 0.622
LSA_03790
Hypothetical protein.
 
     0.513
LSA_02390
Hypothetical protein.
 
     0.511
LSA_09950
Hypothetical protein.
  
     0.504
LSA_03770
Hypothetical protein.
 
     0.474
LSA_10320
Hypothetical protein.
  
     0.470
vanR
Regulatory protein vanR.
       0.429
LSA_07190
Hypothetical protein.
  
     0.411
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.