Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LSA_04380 | LSA_04410 | LSA_04380 | LSA_04410 | Hypothetical protein. | Hypothetical protein. | 0.405 |
LSA_04380 | guaA | LSA_04380 | LSA_01810 | Hypothetical protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.448 |
LSA_04380 | nadE | LSA_04380 | LSA_04400 | Hypothetical protein. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.475 |
LSA_04380 | pncB | LSA_04380 | LSA_04390 | Hypothetical protein. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.549 |
LSA_04410 | LSA_04380 | LSA_04410 | LSA_04380 | Hypothetical protein. | Hypothetical protein. | 0.405 |
LSA_04410 | LSA_04420 | LSA_04410 | LSA_04420 | Hypothetical protein. | SprT-like protein; Belongs to the SprT family. | 0.766 |
LSA_04410 | nadE | LSA_04410 | LSA_04400 | Hypothetical protein. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.707 |
LSA_04410 | pncB | LSA_04410 | LSA_04390 | Hypothetical protein. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.580 |
LSA_04420 | LSA_04410 | LSA_04420 | LSA_04410 | SprT-like protein; Belongs to the SprT family. | Hypothetical protein. | 0.766 |
LSA_04420 | nadE | LSA_04420 | LSA_04400 | SprT-like protein; Belongs to the SprT family. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.687 |
LSA_04420 | pncB | LSA_04420 | LSA_04390 | SprT-like protein; Belongs to the SprT family. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.555 |
LSA_11890 | guaA | LSA_11890 | LSA_01810 | Hypothetical protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.828 |
LSA_11890 | nadD | LSA_11890 | LSA_06250 | Hypothetical protein. | Putative nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.680 |
LSA_11890 | nadE | LSA_11890 | LSA_04400 | Hypothetical protein. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.624 |
LSA_11890 | pncB | LSA_11890 | LSA_04390 | Hypothetical protein. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.420 |
cinA | guaA | LSA_09120 | LSA_01810 | Putative competence-damage inducible protein; Belongs to the CinA family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.465 |
cinA | nadD | LSA_09120 | LSA_06250 | Putative competence-damage inducible protein; Belongs to the CinA family. | Putative nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.975 |
cinA | nadE | LSA_09120 | LSA_04400 | Putative competence-damage inducible protein; Belongs to the CinA family. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.718 |
cinA | pncB | LSA_09120 | LSA_04390 | Putative competence-damage inducible protein; Belongs to the CinA family. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.961 |
cinA | ppnK | LSA_09120 | LSA_10250 | Putative competence-damage inducible protein; Belongs to the CinA family. | Putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.429 |
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