STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSA_08730Hypothetical protein. (174 aa)    
Predicted Functional Partners:
nagD
Protein nagD-like protein; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
 
  
 0.930
LSA_08740
Hypothetical protein; Belongs to the 5'-nucleotidase family.
 
    0.900
LSA_08710
Hypothetical protein.
  
    0.859
LSA_04840
Initiation-control protein yabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.697
LSA_06160
Hypothetical protein.
  
    0.693
rpoE
Putative DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.682
LSA_06050
Hypothetical protein.
  
     0.661
yqeH
Uncharacterized protein yqeH.
  
     0.578
LSA_08750
Hypothetical protein; Belongs to the fructosamine kinase family.
       0.574
ecsA
ABC-type transporter ATP-binding protein ecsA.
  
     0.562
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.