STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpDV-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. (200 aa)    
Predicted Functional Partners:
atpB
V-type sodium ATPase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
 0.999
atpA
V-type sodium ATPase catalytic subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.999
OJG64005.1
V-type ATP synthase subunit F.
 
 0.999
OJG64006.1
Hypothetical protein.
 
 0.999
OJG64007.1
Hypothetical protein.
 
 0.999
OJG64008.1
V-type sodium ATPase subunit K; Belongs to the V-ATPase proteolipid subunit family.
 
 0.999
OJG64009.1
Hypothetical protein; Belongs to the V-ATPase 116 kDa subunit family.
 
 0.999
atpE
ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.991
OJG64001.1
TrkH family potassium uptake protein.
     
 0.749
OJG57778.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.648
Your Current Organism:
Enterococcus malodoratus
NCBI taxonomy Id: 71451
Other names: ATCC 43197, CCUG 30572, CIP 103012, DSM 20681, E. malodoratus, JCM 8730, LMG 10747, LMG:10747, NBRC 100489, NCDO 846, NCIMB 700846, NCTC 12365, Streptococcus faecalis subsp. malodoratus
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