Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG60369.1 | OJG62804.1 | RV07_GL002231 | RV07_GL001263 | Hypothetical protein. | Hypothetical protein. | 0.836 |
OJG60369.1 | OJG63998.1 | RV07_GL002231 | RV07_GL000638 | Hypothetical protein. | Lactoylglutathione lyase. | 0.836 |
OJG60369.1 | OJG64015.1 | RV07_GL002231 | RV07_GL000655 | Hypothetical protein. | Aldo/keto reductase. | 0.823 |
OJG60369.1 | OJG64476.1 | RV07_GL002231 | RV07_GL004178 | Hypothetical protein. | Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.549 |
OJG60369.1 | OJG64500.1 | RV07_GL002231 | RV07_GL004202 | Hypothetical protein. | Hypothetical protein. | 0.836 |
OJG60369.1 | OJG66379.1 | RV07_GL002231 | RV07_GL000172 | Hypothetical protein. | Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.512 |
OJG60369.1 | ilvA | RV07_GL002231 | RV07_GL004249 | Hypothetical protein. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.549 |
OJG60369.1 | trpA | RV07_GL002231 | RV07_GL000942 | Hypothetical protein. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.768 |
OJG62016.1 | OJG64015.1 | RV07_GL001900 | RV07_GL000655 | Lactaldehyde reductase. | Aldo/keto reductase. | 0.865 |
OJG62016.1 | OJG64544.1 | RV07_GL001900 | RV07_GL004246 | Lactaldehyde reductase. | Hypothetical protein. | 0.895 |
OJG62016.1 | OJG66379.1 | RV07_GL001900 | RV07_GL000172 | Lactaldehyde reductase. | Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.726 |
OJG62804.1 | OJG60369.1 | RV07_GL001263 | RV07_GL002231 | Hypothetical protein. | Hypothetical protein. | 0.836 |
OJG62804.1 | OJG64015.1 | RV07_GL001263 | RV07_GL000655 | Hypothetical protein. | Aldo/keto reductase. | 0.873 |
OJG62804.1 | OJG64476.1 | RV07_GL001263 | RV07_GL004178 | Hypothetical protein. | Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.850 |
OJG62804.1 | OJG64500.1 | RV07_GL001263 | RV07_GL004202 | Hypothetical protein. | Hypothetical protein. | 0.924 |
OJG62804.1 | OJG66379.1 | RV07_GL001263 | RV07_GL000172 | Hypothetical protein. | Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.473 |
OJG62804.1 | ilvA | RV07_GL001263 | RV07_GL004249 | Hypothetical protein. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.850 |
OJG63998.1 | OJG60369.1 | RV07_GL000638 | RV07_GL002231 | Lactoylglutathione lyase. | Hypothetical protein. | 0.836 |
OJG63998.1 | OJG64015.1 | RV07_GL000638 | RV07_GL000655 | Lactoylglutathione lyase. | Aldo/keto reductase. | 0.873 |
OJG63998.1 | OJG64476.1 | RV07_GL000638 | RV07_GL004178 | Lactoylglutathione lyase. | Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.850 |
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