Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG86589.1 | OJG86594.1 | RV13_GL000235 | RV13_GL000240 | Hypothetical protein. | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | 0.794 |
OJG86589.1 | OJG86595.1 | RV13_GL000235 | RV13_GL000241 | Hypothetical protein. | Hemolysin TlyA family protein. | 0.576 |
OJG86589.1 | OJG86597.1 | RV13_GL000235 | RV13_GL000243 | Hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.505 |
OJG86589.1 | argR | RV13_GL000235 | RV13_GL000242 | Hypothetical protein. | Arginine repressor; Regulates arginine biosynthesis genes. | 0.650 |
OJG86589.1 | folD | RV13_GL000235 | RV13_GL000237 | Hypothetical protein. | FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.852 |
OJG86589.1 | nusB | RV13_GL000235 | RV13_GL000236 | Hypothetical protein. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.955 |
OJG86589.1 | xseA | RV13_GL000235 | RV13_GL000238 | Hypothetical protein. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.825 |
OJG86589.1 | xseB | RV13_GL000235 | RV13_GL000239 | Hypothetical protein. | Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.793 |
OJG86594.1 | OJG86589.1 | RV13_GL000240 | RV13_GL000235 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | Hypothetical protein. | 0.794 |
OJG86594.1 | OJG86595.1 | RV13_GL000240 | RV13_GL000241 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | Hemolysin TlyA family protein. | 0.946 |
OJG86594.1 | OJG86597.1 | RV13_GL000240 | RV13_GL000243 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.827 |
OJG86594.1 | argR | RV13_GL000240 | RV13_GL000242 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | Arginine repressor; Regulates arginine biosynthesis genes. | 0.842 |
OJG86594.1 | folD | RV13_GL000240 | RV13_GL000237 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.937 |
OJG86594.1 | hemC | RV13_GL000240 | RV13_GL001099 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | 0.650 |
OJG86594.1 | nusB | RV13_GL000240 | RV13_GL000236 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.853 |
OJG86594.1 | xseA | RV13_GL000240 | RV13_GL000238 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.973 |
OJG86594.1 | xseB | RV13_GL000240 | RV13_GL000239 | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.966 |
OJG86595.1 | OJG86589.1 | RV13_GL000241 | RV13_GL000235 | Hemolysin TlyA family protein. | Hypothetical protein. | 0.576 |
OJG86595.1 | OJG86594.1 | RV13_GL000241 | RV13_GL000240 | Hemolysin TlyA family protein. | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | 0.946 |
OJG86595.1 | OJG86597.1 | RV13_GL000241 | RV13_GL000243 | Hemolysin TlyA family protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.908 |
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