STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJG84864.1Ammonium transporter. (404 aa)    
Predicted Functional Partners:
OJG84865.1
Hypothetical protein.
 0.997
OJG84083.1
Hypothetical protein; Belongs to the P(II) protein family.
 
 0.981
OJG84084.1
Hypothetical protein.
 
 0.979
OJG84061.1
Ammonium transporter; Belongs to the P(II) protein family.
 
0.966
OJG84013.1
Hypothetical protein.
  
 0.957
OJG86617.1
Hypothetical protein.
 
  
 0.886
OJG84195.1
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.625
rsmI
16S rRNA (-2-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.545
OJG84036.1
Hypothetical protein.
  
 
  0.525
OJG85963.1
Glutamine synthetase.
  
  
 0.516
Your Current Organism:
Enterococcus raffinosus
NCBI taxonomy Id: 71452
Other names: ATCC 49427, CCUG 29292, CIP 103329, DSM 5633, E. raffinosus, JCM 8733, LMG 12888, LMG:12888, NBRC 100492, NCIMB 12901, NCTC 12192
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