Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG84347.1 | OJG84563.1 | RV13_GL001983 | RV13_GL001818 | Hypothetical protein. | Hypothetical protein. | 0.646 |
OJG84347.1 | OJG84591.1 | RV13_GL001983 | RV13_GL001846 | Hypothetical protein. | Cell division protein ZapA. | 0.683 |
OJG84347.1 | OJG87295.1 | RV13_GL001983 | RV13_GL003687 | Hypothetical protein. | Hypothetical protein. | 0.508 |
OJG84563.1 | OJG84347.1 | RV13_GL001818 | RV13_GL001983 | Hypothetical protein. | Hypothetical protein. | 0.646 |
OJG84563.1 | OJG84591.1 | RV13_GL001818 | RV13_GL001846 | Hypothetical protein. | Cell division protein ZapA. | 0.710 |
OJG84563.1 | OJG85171.1 | RV13_GL001818 | RV13_GL001197 | Hypothetical protein. | Hypothetical protein. | 0.444 |
OJG84563.1 | OJG87295.1 | RV13_GL001818 | RV13_GL003687 | Hypothetical protein. | Hypothetical protein. | 0.448 |
OJG84588.1 | OJG84590.1 | RV13_GL001843 | RV13_GL001845 | Thioredoxin; Belongs to the thioredoxin family. | Hypothetical protein. | 0.748 |
OJG84588.1 | OJG84591.1 | RV13_GL001843 | RV13_GL001846 | Thioredoxin; Belongs to the thioredoxin family. | Cell division protein ZapA. | 0.706 |
OJG84588.1 | ftsZ | RV13_GL001843 | RV13_GL000254 | Thioredoxin; Belongs to the thioredoxin family. | Cell division protein ftsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.412 |
OJG84588.1 | mutS2 | RV13_GL001843 | RV13_GL001844 | Thioredoxin; Belongs to the thioredoxin family. | MutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.797 |
OJG84588.1 | rnhC | RV13_GL001843 | RV13_GL001847 | Thioredoxin; Belongs to the thioredoxin family. | Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.406 |
OJG84588.1 | uvrC | RV13_GL001843 | RV13_GL001842 | Thioredoxin; Belongs to the thioredoxin family. | UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.828 |
OJG84590.1 | OJG84588.1 | RV13_GL001845 | RV13_GL001843 | Hypothetical protein. | Thioredoxin; Belongs to the thioredoxin family. | 0.748 |
OJG84590.1 | OJG84591.1 | RV13_GL001845 | RV13_GL001846 | Hypothetical protein. | Cell division protein ZapA. | 0.913 |
OJG84590.1 | mutS2 | RV13_GL001845 | RV13_GL001844 | Hypothetical protein. | MutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.837 |
OJG84590.1 | rnhC | RV13_GL001845 | RV13_GL001847 | Hypothetical protein. | Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.778 |
OJG84590.1 | uvrC | RV13_GL001845 | RV13_GL001842 | Hypothetical protein. | UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.690 |
OJG84591.1 | OJG84347.1 | RV13_GL001846 | RV13_GL001983 | Cell division protein ZapA. | Hypothetical protein. | 0.683 |
OJG84591.1 | OJG84563.1 | RV13_GL001846 | RV13_GL001818 | Cell division protein ZapA. | Hypothetical protein. | 0.710 |
page 1 of 3