Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG78884.1 | OJG78885.1 | RV13_GL003384 | RV13_GL003385 | GNAT family acetyltransferase. | Permease. | 0.840 |
OJG78884.1 | OJG78886.1 | RV13_GL003384 | RV13_GL003386 | GNAT family acetyltransferase. | Hemolysin. | 0.741 |
OJG78884.1 | OJG85865.1 | RV13_GL003384 | RV13_GL000656 | GNAT family acetyltransferase. | Hypothetical protein. | 0.466 |
OJG78884.1 | OJG86595.1 | RV13_GL003384 | RV13_GL000241 | GNAT family acetyltransferase. | Hemolysin TlyA family protein. | 0.457 |
OJG78884.1 | OJG88045.1 | RV13_GL003384 | RV13_GL003118 | GNAT family acetyltransferase. | Hypothetical protein. | 0.608 |
OJG78884.1 | ftsH | RV13_GL003384 | RV13_GL003656 | GNAT family acetyltransferase. | ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.554 |
OJG78884.1 | mltG | RV13_GL003384 | RV13_GL000302 | GNAT family acetyltransferase. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.476 |
OJG78884.1 | prfC | RV13_GL003384 | RV13_GL003387 | GNAT family acetyltransferase. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.585 |
OJG78884.1 | rnfB | RV13_GL003384 | RV13_GL000227 | GNAT family acetyltransferase. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.476 |
OJG78884.1 | rpoC | RV13_GL003384 | RV13_GL002534 | GNAT family acetyltransferase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.643 |
OJG78885.1 | OJG78884.1 | RV13_GL003385 | RV13_GL003384 | Permease. | GNAT family acetyltransferase. | 0.840 |
OJG78885.1 | OJG78886.1 | RV13_GL003385 | RV13_GL003386 | Permease. | Hemolysin. | 0.807 |
OJG78885.1 | prfC | RV13_GL003385 | RV13_GL003387 | Permease. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.731 |
OJG78886.1 | OJG78884.1 | RV13_GL003386 | RV13_GL003384 | Hemolysin. | GNAT family acetyltransferase. | 0.741 |
OJG78886.1 | OJG78885.1 | RV13_GL003386 | RV13_GL003385 | Hemolysin. | Permease. | 0.807 |
OJG78886.1 | prfC | RV13_GL003386 | RV13_GL003387 | Hemolysin. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.773 |
OJG85865.1 | OJG78884.1 | RV13_GL000656 | RV13_GL003384 | Hypothetical protein. | GNAT family acetyltransferase. | 0.466 |
OJG85865.1 | ftsH | RV13_GL000656 | RV13_GL003656 | Hypothetical protein. | ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.554 |
OJG85865.1 | mltG | RV13_GL000656 | RV13_GL000302 | Hypothetical protein. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.476 |
OJG85865.1 | rnfB | RV13_GL000656 | RV13_GL000227 | Hypothetical protein. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.476 |
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