STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001623405_01238Unannotated protein. (348 aa)    
Predicted Functional Partners:
GCA_001623405_01766
Unannotated protein.
  
 
  0.675
GCA_001623405_00638
Unannotated protein.
 
  
  0.605
GCA_001623405_01342
Unannotated protein.
     
 0.543
GCA_001623405_01237
Unannotated protein.
       0.537
GCA_001623405_01243
Unannotated protein.
    
  0.529
GCA_001623405_00141
Unannotated protein.
    0.526
GCA_001623405_00798
Unannotated protein.
     
 0.524
GCA_001623405_02135
Unannotated protein.
     
 0.522
Your Current Organism:
Hydrotalea flava
NCBI taxonomy Id: 714549
Other names: CCM 7760, CCUG 51397, Chitinophagaceae bacterium CCUG 51397, Chitinophagaceae bacterium CCUG 53736, Chitinophagaceae bacterium CCUG 53920, H. flava, Hydrotalea flava Kampfer et al. 2011 emend. Albuquerque et al. 2012
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.