STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ29080.1KEGG: cpi:Cpin_1718 hypothetical protein; SPTR: Putative uncharacterized protein. (250 aa)    
Predicted Functional Partners:
EHQ29081.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_1716 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug.
       0.768
EHQ29082.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: shg:Sph21_0807 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR.
       0.468
Your Current Organism:
Mucilaginibacter paludis
NCBI taxonomy Id: 714943
Other names: M. paludis DSM 18603, Mucilaginibacter paludis DSM 18603, Mucilaginibacter paludis TPT56, Mucilaginibacter paludis str. DSM 18603, Mucilaginibacter paludis strain DSM 18603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.