STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABI_22790Helix-turn-helix domain-containing protein; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system. (113 aa)    
Predicted Functional Partners:
ABI_22800
[K] COG2944 Predicted transcriptional regulator.
 
 
 
 0.994
ABI_23230
relB antitoxin family protein; [L] COG3077 DNA-damage-inducible protein J.
 
 
 0.960
ABI_30900
[K] COG2944 Predicted transcriptional regulator.
 
 
 
 0.958
ABI_42690
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.860
ABI_11960
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.857
ABI_22780
trbC/VIRB2 family protein; [U] COG3838 Type IV secretory pathway, VirB2 components (pilins).
 
     0.625
ABI_30910
[S] COG4737 Uncharacterized protein conserved in bacteria.
  
     0.579
ABI_22760
[U] COG3451 Type IV secretory pathway, VirB4 components.
 
     0.532
ABI_12010
PIN domain protein; [R] COG1487 Predicted nucleic acid-binding protein, contains PIN domain.
 
   
 0.527
ABI_13610
PIN domain protein; [S] COG3744 Uncharacterized protein conserved in bacteria.
  
     0.520
Your Current Organism:
Asticcacaulis biprosthecum
NCBI taxonomy Id: 715226
Other names: A. biprosthecum C19, Asticcacaulis biprosthecum C19, Asticcacaulis biprosthecum str. C19, Asticcacaulis biprosthecum strain C19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.