STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABI_41060Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein; PRIAM ID: PRI001931; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (379 aa)    
Predicted Functional Partners:
ABI_41040
Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.846
ABI_41030
[GEPR] COG0477 Permeases of the major facilitator superfamily.
 
     0.707
ABI_41050
Aldo/keto reductase family protein; PRIAM ID: PRI002440; [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
    0.684
rhmD
Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
  
 
0.665
ABI_41070
Bacterial regulatory protein, gntR family protein; [K] COG1802 Transcriptional regulators.
 
     0.593
ABI_17870
Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.568
ABI_40780
[C] COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
    
 0.552
kdgD
5-dehydro-4-deoxyglucarate dehydratase; [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
  
 0.498
ABI_30760
PRIAM ID: PRI003196; [G] COG2133 Glucose/sorbosone dehydrogenases.
 
  
  0.414
ABI_10960
Amidohydrolase family protein; [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
  0.411
Your Current Organism:
Asticcacaulis biprosthecum
NCBI taxonomy Id: 715226
Other names: A. biprosthecum C19, Asticcacaulis biprosthecum C19, Asticcacaulis biprosthecum str. C19, Asticcacaulis biprosthecum strain C19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.