STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RP20_CCG000183Putative spliceosomal protein snrnp-u1a/u2b. (216 aa)    
Predicted Functional Partners:
RP20_CCG001573
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.995
RP20_CCG018364
Small nuclear ribonucleoprotein G.
   
 0.994
RP20_CCG000131
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
   
 0.993
RP20_CCG000563
Uncharacterized protein.
   
 0.985
RP20_CCG000616
PSP domain-containing protein.
   
 0.985
RP20_CCG017332
TOG domain-containing protein.
   
 0.984
RP20_CCG000393
Uncharacterized protein.
   
 
 0.983
RP20_CCG006039
Uncharacterized protein.
   
 0.983
RP20_CCG023599
CPSF_A domain-containing protein.
   
 0.982
RP20_CCG015895
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.980
Your Current Organism:
Aedes albopictus
NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito
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