RP20_CCG002235 protein (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP20_CCG002235

MFS domain-containing protein. (733 aa)

Predicted Functional Partners:

RP20_CCG001519

0.571

RP20_CCG001520

0.571

RP20_CCG016113

0.571

RP20_CCG027412

0.438

RP20_CCG022012

0.430

RP20_CCG008788

0.400

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP20_CCG001519	RP20_CCG001520	A0A023EIC5	A0A182G2M6	Putative rab3 effector rim1.	Uncharacterized protein.	0.896
RP20_CCG001519	RP20_CCG002235	A0A023EIC5	A0A182G3N9	Putative rab3 effector rim1.	MFS domain-containing protein.	0.571
RP20_CCG001519	RP20_CCG008788	A0A023EIC5	A0A182GF13	Putative rab3 effector rim1.	V-SNARE coiled-coil homology domain-containing protein.	0.963
RP20_CCG001519	RP20_CCG016113	A0A023EIC5	A0A182GUR3	Putative rab3 effector rim1.	Uncharacterized protein.	0.823
RP20_CCG001519	RP20_CCG027412	A0A023EIC5	A0A182HDR5	Putative rab3 effector rim1.	C2 domain-containing protein.	0.549
RP20_CCG001520	RP20_CCG001519	A0A182G2M6	A0A023EIC5	Uncharacterized protein.	Putative rab3 effector rim1.	0.896
RP20_CCG001520	RP20_CCG002235	A0A182G2M6	A0A182G3N9	Uncharacterized protein.	MFS domain-containing protein.	0.571
RP20_CCG001520	RP20_CCG008788	A0A182G2M6	A0A182GF13	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.963
RP20_CCG001520	RP20_CCG027412	A0A182G2M6	A0A182HDR5	Uncharacterized protein.	C2 domain-containing protein.	0.549
RP20_CCG002235	RP20_CCG001519	A0A182G3N9	A0A023EIC5	MFS domain-containing protein.	Putative rab3 effector rim1.	0.571
RP20_CCG002235	RP20_CCG001520	A0A182G3N9	A0A182G2M6	MFS domain-containing protein.	Uncharacterized protein.	0.571
RP20_CCG002235	RP20_CCG008788	A0A182G3N9	A0A182GF13	MFS domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.400
RP20_CCG002235	RP20_CCG016113	A0A182G3N9	A0A182GUR3	MFS domain-containing protein.	Uncharacterized protein.	0.571
RP20_CCG002235	RP20_CCG022012	A0A182G3N9	A0A182H5A6	MFS domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.430
RP20_CCG002235	RP20_CCG027412	A0A182G3N9	A0A182HDR5	MFS domain-containing protein.	C2 domain-containing protein.	0.438
RP20_CCG008788	RP20_CCG001519	A0A182GF13	A0A023EIC5	V-SNARE coiled-coil homology domain-containing protein.	Putative rab3 effector rim1.	0.963
RP20_CCG008788	RP20_CCG001520	A0A182GF13	A0A182G2M6	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.963
RP20_CCG008788	RP20_CCG002235	A0A182GF13	A0A182G3N9	V-SNARE coiled-coil homology domain-containing protein.	MFS domain-containing protein.	0.400
RP20_CCG008788	RP20_CCG016113	A0A182GF13	A0A182GUR3	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.963
RP20_CCG008788	RP20_CCG027412	A0A182GF13	A0A182HDR5	V-SNARE coiled-coil homology domain-containing protein.	C2 domain-containing protein.	0.966